RnoEX6037592 @ rn6
Exon Skipping
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116860058-116860624:+
Coord C1 exon
chr8:116860058-116860188
Coord A exon
chr8:116860267-116860369
Coord C2 exon
chr8:116860488-116860624
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCTCTTGCCTGCCACCACAGGCT
3' ss Score
5.31
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGACCTTCGTGAGAATTTCTGCCGGAATCCTGATGGCTCCGAGGCGCCTTGGTGCTTCACATCTCGACCTGGTTTGCGTGTGGCCTTTTGCTACCAGATCCCACGCTGCACAGAAGAAGTGGTGCCAGAGG
Seq A exon
GCTGCTACCATGGCTCAGGTGAACAGTATCGTGGCTCAGTCAGCAAGACACGCAAGGGCGTTCAGTGCCAGCACTGGTCCTCAGAGACACCACATAAGCCACA
Seq C2 exon
ATTCACACCCACCTCAGCACCACATGCAGGCTTGGAGGCAAACTTTTGCCGGAATCCGGATGGAGATAGCCATGGGCCCTGGTGTTATACTTTGGACCCAGAGACCCTGTTTGACTACTGTGCCCTAAAACGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680-'18-12,'18-11,19-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.257 C2=0.191
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(45.6=80.0)
A:
PF0005113=Kringle=PU(41.8=94.3)
C2:
PF0005113=Kringle=PD(57.0=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGCCGGAATCCTGATGG
R:
CACAGCGTTTTAGGGCACAGT
Band lengths:
253-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]