GgaEX7007672 @ galGal4
Exon Skipping
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2481367-2481886:+
Coord C1 exon
chr12:2481367-2481497
Coord A exon
chr12:2481570-2481672
Coord C2 exon
chr12:2481750-2481886
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCTGCCTGTCCCCAGAGT
3' ss Score
10.64
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGACCTGCAGGAGAACTACTGCCGCAACCCCGATGGCTCAGAGGCCCCGTGGTGCTTCACCACCCGCCCCGGCATGCGCGTCGCCTTCTGCTTCCACATCCGTCGCTGTGACGACGAGCTGGACGCGGAAG
Seq A exon
AGTGCTACCACGGCCACGGTGAGCGGTACCACGGCCACGTCAGTAAGACGCGCAAGGGCATCACGTGCCAGAGGTGGGACGCCACGACACCCCACGTGCCACA
Seq C2 exon
GATCTCGCCCACCACCCACCCCGAGGCACACCTGGAGAAGAACTACTGCCGCAACCCCGACAACGACAGCCACGGCCCCTGGTGCTACACCATGGATCCACGCACACCCTTTGACTACTGTGCCATCAAGCCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722-'11-14,'11-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.277
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(45.6=80.0)
A:
PF0005113=Kringle=PU(41.8=94.3)
C2:
PF0005113=Kringle=PD(57.0=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGAACTACTGCCGCAAC
R:
AGTAGTCAAAGGGTGTGCGTG
Band lengths:
243-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]