MmuEX6068821 @ mm10
Exon Skipping
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108082820-108083390:+
Coord C1 exon
chr9:108082820-108082950
Coord A exon
chr9:108083029-108083131
Coord C2 exon
chr9:108083254-108083390
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTCTTGCCTGCCCACCACAGGAT
3' ss Score
7.79
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGACCTTCGTGAGAATTTCTGCCGGAATCCTGATGGCTCCGAGGCGCCTTGGTGCTTCACATCTCGACCTGGTTTGCGCATGGCCTTCTGCCACCAGATCCCACGCTGCACTGAAGAACTGGTGCCAGAGG
Seq A exon
GATGCTACCACGGCTCAGGTGAACAGTATCGTGGCTCAGTCAGCAAGACGCGCAAGGGCGTTCAGTGCCAGCACTGGTCCTCTGAGACACCGCACAAGCCACA
Seq C2 exon
ATTTACACCCACCTCGGCACCGCAGGCGGGACTGGAGGCCAACTTCTGCAGGAATCCTGATGGGGATAGCCATGGGCCCTGGTGCTATACCTTGGACCCGGATATCCTGTTTGACTACTGTGCCCTACAGCGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591-'16-13,'16-12,17-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.257 C2=0.213
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(45.6=80.0)
A:
PF0005113=Kringle=PU(41.8=94.3)
C2:
PF0005113=Kringle=PD(57.0=95.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGCCGGAATCCTGATGG
R:
AGGGCACAGTAGTCAAACAGG
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types