Special

BtaEX0023225 @ bosTau6

Exon Skipping

Gene
Description
myotubularin related protein 8 [Source:HGNC Symbol;Acc:HGNC:16825]
Coordinates
chrX:101239545-101277666:+
Coord C1 exon
chrX:101239545-101239679
Coord A exon
chrX:101268820-101268952
Coord C2 exon
chrX:101277541-101277666
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTATGTTCTCAATATTACAGTTA
3' ss Score
7.18
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCTGCCATTTGCCGCTGTAGCCAGCCTCTATCTGGATTTTATACTCGTTGCATAGATGATGAACTCCTGCTAGAGGCTATTCGCCAGACAAATCCAGGGAGCCAGTTCTTGTATGTTGTAGACACAAGACCAAAG
Seq A exon
TTAAATGCCTTGGCCAACCGAGCAGCTGGGAAGGGGTATGAAAATGAAGACAACTATGCCAACATTCGCTTCAGGTTCATGAGCATTGAGAACATCCATGTGATGCGGAGCAGCCTGCAGAAACTCTTGGAAG
Seq C2 exon
GCAGTGAAGGTAGAAAAGACCAATGTCTTAGTCCATTGTTCTGATGGGTGGGACCGCACAGCACAAGTTTGCTCTGTGGCCAGCATCCTCCTAGATCCATTTTATAGGACATTCAAAGGACTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035705_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF066029=Myotub-related=FE(12.7=100)
A:
PF066029=Myotub-related=FE(12.7=100)
C2:
PF066029=Myotub-related=FE(11.8=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTGCCGCTGTAGCCAG
R:
TGTCCTATAAAATGGATCTAGGAGGA
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development