GgaEX6033528 @ galGal3
Exon Skipping
Gene
ENSGALG00000007590 | MTMR8
Description
NA
Coordinates
chr4:11723279-11727463:+
Coord C1 exon
chr4:11723279-11723413
Coord A exon
chr4:11725301-11725433
Coord C2 exon
chr4:11727354-11727463
Length
133 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTTGAATTTGACAGTTA
3' ss Score
6.5
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCTGCCATATGTCGTTGTAGCCAGCCCCTCTCTGGGTTCAGTGCTCGTTGTTTGGAGGATGAACAAATGTTGCAGGCAATCAGAGAAGCCAACCCTGGGAGTCCCTTCATGTATGTTGTAGACACAAGGCCAAAG
Seq A exon
TTAAATGCCATGGCCAACCGAGCTGCTGGGAAGGGTTATGAGAACGAAGACAATTATGATAACATTCGCTTTAAATTTATTGGCATTGAAAACATCCATGTGATGCGGAGCAGCTTGCAGAAACTCCTGGAAG
Seq C2 exon
TCTGCGAAACAAAGTCTCCATCAATGAGTGATTTCCTTACTGGGCTGGAGAACTCAGGTTGGTTGCGGCACATAAAGGCTGTCGTGGATGCAAGTGTCTTTCTCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007590-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(12.8=100)
C2:
PF066029=Myotub-related=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCATATGTCGTTGTAGC
R:
TGCGAGAAAGACACTTGCATCC
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]