MmuEX0030103 @ mm10
Exon Skipping
Gene
ENSMUSG00000021987 | Mtmr6
Description
myotubularin related protein 6 [Source:MGI Symbol;Acc:MGI:2145637]
Coordinates
chr14:60289543-60296169:+
Coord C1 exon
chr14:60289543-60289677
Coord A exon
chr14:60291994-60292126
Coord C2 exon
chr14:60296120-60296169
Length
133 bp
Sequences
Splice sites
3' ss Seq
TCTAAAATTTTGAATTTTAGCTC
3' ss Score
6.64
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCTGCCATTTGTCGATGTAGTCAGCCATTGTCAGGCTTCAGTGCCAGGTGCCTAGAGGATGAGCATTTGCTTCAAGCCATTAGTAAAGCCAACCCAGGAAACCGCTACATGTATGTTGTGGATACCAGGCCCAAG
Seq A exon
CTCAATGCAATAGCTAACAGAGCAGCTGGAAAAGGTTATGAAAATGAAGACAACTATTCTAATATTAGATTTCAGTTCGTTGGAATAGAAAATATTCATGTCATGAGATCCAGCCTTCAGAAATTACTGGAAG
Seq C2 exon
GTTTTAATAGAAAAAGATTGGATATCATTTGGGCATAAATTTTCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021987_MULTIEX2-2/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(12.8=100)
C2:
PF066029=Myotub-related=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCATTTGTCGATGTAGT
R:
TCTCTGAAAATTTATGCCCAAATGA
Band lengths:
184-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types