RnoEX0056453 @ rn6
Exon Skipping
Gene
ENSRNOG00000012918 | Mtmr6
Description
myotubularin related protein 6 [Source:RGD Symbol;Acc:1305378]
Coordinates
chr15:40584527-40591116:+
Coord C1 exon
chr15:40584527-40584661
Coord A exon
chr15:40586944-40587076
Coord C2 exon
chr15:40591067-40591116
Length
133 bp
Sequences
Splice sites
3' ss Seq
TCTAAAATTTTTAATTTTAGCTC
3' ss Score
7.26
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCTGCCATTTGTCGATGCAGTCAGCCATTGTCAGGCTTCAGTGCCAGGTGCCTAGAGGATGAGCATTTGCTTCAAGCCATTAGTAAAGCCAACCCAGGAAACCGCTACATGTATGTTGTGGATACCAGGCCCAAG
Seq A exon
CTCAATGCAATGGCTAACAGAGCAGCTGGAAAAGGTTATGAAAATGAAGACAACTATTCTAATATTAGATTTCAGTTTGTTGGAATAGAAAATATTCATGTCATGAGATCCAGCCTTCAGAAATTACTGGAAG
Seq C2 exon
GTTTTAATAGAAAAAGATTGGATATCATTTGGGCATAAATTTTCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012918_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(19.8=100)
A:
PF066029=Myotub-related=FE(19.8=100)
C2:
PF066029=Myotub-related=FE(4.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATTTGTCGATGCAGTCA
R:
TCTCTGAAAATTTATGCCCAAATGA
Band lengths:
182-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]