GgaEX1037501 @ galGal4
Exon Skipping
Gene
ENSGALG00000017112 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr1:176338945-176358745:+
Coord C1 exon
chr1:176338945-176339761
Coord A exon
chr1:176349873-176350005
Coord C2 exon
chr1:176358545-176358745
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTTGATTTTGTTCTTCTTAGCTT
3' ss Score
7.18
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTTCCAACCCCAATGATTCTGATTCTGCTCCGCACAAGGCATAAGGAACCAGGGAATGATTCTTTTTCCCCACAGTCTCCCTAATAGCAGCTGCCAGGAGAGGTTCTGCAGCCAGCACTGAGCTCCACAGCTCATAGGACTGCACGCTCATTCCCTTCTTCCCCGACCGCAGCTCCCAGAGGGACTCCCTGAAACACTGCGAGGCGCTACCAGACGCATTAAGGAAAAACAGCGCACCACCACGCAGGCCCTTATGCTGCCTTCACACCCCCAATATGGCGCCACCTCCTGAAGGCGCATGCGCAGGAAGTCGTGACGAGGCGCTGCGCACCCTCCCGCCGCCAGGGGGCGCTGCAAGCAGTTAGGGCAGGCTCCGCCCGGCCCCGCCTCGCCCCGCCCCGGAAGCGGCAGTAGGTGACGGCCGGCCCGGCCCGGCGGCGGTACGCTCTGTTTTCAGCCGCGCGCTCGGGGTCGTCATGGAGCACATCCGCACCACCAAG
Seq A exon
CTTAATGCAATGGCAAACAGAGCTGCTGGGAAGGGCTATGAAAATGAAGACAACTACTCTAACATTAGGTTCCAGTTTGTTGGAATTGAAAATATTCATGTAATGAGATCCAGCTTACAAAAACTTCTGGAAG
Seq C2 exon
GTGCTGTCAGTTGGATGGTGATCCAAAAGAGATCTCGCCAGTGTTCACTCAGTTTTTAGAGAGTGTGTGGAATCTGACTGAGCAGTTCCCACAAGCCTTTGAGTATAATGAAGCTTTCCTCCTTCAGATCCATGAACATGTCCACTCGTGCCAGTTTGGGAACTTCCTTGGAAACTGCCAAAAAGAACGAGAAGAACTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017112_MULTIEX1-6/10=C1-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF066029=Myotub-related=FE(12.8=100)
C2:
PF066029=Myotub-related=PD(19.2=97.1),PF097894=DUF2353=PU(12.0=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCAGTTAGGGCAGGCTC
R:
AAAGGCTTGTGGGAACTGCTC
Band lengths:
246-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]