GgaEX1037501 @ galGal3
Exon Skipping
Gene
ENSGALG00000017112 | MTMR6
Description
NA
Coordinates
chr1:181396224-181402780:+
Coord C1 exon
chr1:181396224-181396358
Coord A exon
chr1:181397565-181397697
Coord C2 exon
chr1:181402671-181402780
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTTGATTTTGTTCTTCTTAGCTT
3' ss Score
7.18
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCTGCAATTTGCAGATGCAGCCAGCCTCTCTCAGGCTTCAGTGCCAGGTGCCTGGAAGATGAACACATGTTGCAAGCAATCAGTAAAGCAAATCCTTCAAATCGCTACATGTATGTTATGGACACCAGGCCAAAG
Seq A exon
CTTAATGCAATGGCAAACAGAGCTGCTGGGAAGGGCTATGAAAATGAAGACAACTACTCTAACATTAGGTTCCAGTTTGTTGGAATTGAAAATATTCATGTAATGAGATCCAGCTTACAAAAACTTCTGGAAG
Seq C2 exon
TCAGTGGCACGAAGGGTTTGTCTGTCAATGACTTCTTGTCTGGTTTGGAGAATTCTGGATGGCTGCGTCATATCAAAGCTGTGTTGGATGCTGCTGTCTTCCTAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017112-'7-8,'7-5,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(12.8=100)
C2:
PF066029=Myotub-related=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGCAGCCAGCCTCTCTC
R:
CTTGACTAGGAAGACAGCAGCA
Band lengths:
234-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]