DreEX6095190 @ danRer10
Exon Skipping
Gene
ENSDARG00000016794 | mtmr6
Description
myotubularin related protein 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5557]
Coordinates
chr24:24903994-24904526:+
Coord C1 exon
chr24:24903994-24904128
Coord A exon
chr24:24904209-24904341
Coord C2 exon
chr24:24904417-24904526
Length
133 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTGTTGTTTTTGCAGTTG
3' ss Score
9.86
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GCAGCAGTGTGTCGGTGTAGTCAGCCTCTTTCTGGCTTCAGCGCTCGCTGTTTGGAAGACGAGCACATGCTTCAGGCCATTAGCAAAGCCAATCACAACAGCCGAAATATATATGTGATGGACACACGACCTAAG
Seq A exon
TTGAACGCATTGGCAAATCGAGCGGCAGGGAAAGGATATGAGAATGAGGACAATTACTCCAATATCCGCTTCCAGTTTGTGGGCATTGAGAACATCCATGTTATGAGGGGAAGTTTGCAAAAGCTTCTAGAAG
Seq C2 exon
TGGTGGGAACACGCTCCCTTTCTATGACTGATTATCTGGTTGGACTGGAAAACAGCGGATGGTTGCGTCACATCAAAGCCATCATGGATGCAGCTATATTCCTTGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016794-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(12.8=100)
C2:
PF066029=Myotub-related=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTGTGTCGGTGTAGTC
R:
TGGCAAGGAATATAGCTGCATCC
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]