DreEX6010250 @ danRer10
Exon Skipping
Gene
ENSDARG00000008592 | mtmr8
Description
myotubularin related protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1016]
Coordinates
chr5:21532728-21536919:-
Coord C1 exon
chr5:21536785-21536919
Coord A exon
chr5:21534234-21534366
Coord C2 exon
chr5:21532728-21532837
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTTTGTCTTTGTCAGTTG
3' ss Score
9.52
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GCTGCGATTTGTCGCTGCAGTCAGCCTTTGTCAGGTTTGAACTCCCGCTGTGTGGAAGACGAGCAGATGCTTCAGGCCATCAGCCAAGCCAATCCAAACTCTCCCTTTATATATGTAGTGGACACACGGCCCAAG
Seq A exon
TTGAATGCAATGGCGAACCGTGCAGCTGGTAAAGGCTATGAGAACGAGGACAATTACTCCAATATCAGGTTCCAGTTTCAGGGAATTGAAAACATCCATGTCATGAGAAGCAGCCTGCAAAAACTGCTGGAGG
Seq C2 exon
TTTGCTCTATGAAGTCTCCCTCTATGAGTGACTATCTGACAGGACTGGAGAACTCTGGCTGGTTGAGACACATCAAATCTGTGATGGATGCAGGGGTCTTCCTCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008592-'9-11,'9-9,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(12.8=100)
C2:
PF066029=Myotub-related=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTTGTCGCTGCAGTCAG
R:
AGGAAGACCCCTGCATCCATC
Band lengths:
234-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]