BtaEX0023538 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015527 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr19:17798531-17805450:+
Coord C1 exon
chr19:17798531-17798601
Coord A exon
chr19:17804945-17805113
Coord C2 exon
chr19:17805376-17805450
Length
169 bp
Sequences
Splice sites
3' ss Seq
AATCTTACCATCCTTTGCAGTTC
3' ss Score
6.94
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CTCTGCGCCTCGGACAAAATCCTGGAGTTTGATCGAGATTTTCGAATTCGACATTATGCAGGGGACGTGGT
Seq A exon
TTCTCCTTGGATCTTTTCTCCCACCCTGAACACAGTGAGCGAGCCTTAGGCAAGTCATCTCACCTCCCCACGGATGAGGCTCTTAGATCCTGTACGTTGCCGTTTTGCTTTTATCTTAGGAATGTGGGATGGCACACACAGCTGTCTTTTTAAAAGTCAGCATCTCGAG
Seq C2 exon
GTATTCTGTCGTTGGTTTTATTGACAAAAACAAAGACACTTTATTTCAAGATTTCAAGCGCCTCATGTATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015527-'13-18,'13-17,14-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
PF0006316=Myosin_head=PD(0.4=11.8)
C2:
PF0006316=Myosin_head=FE(3.7=100)
Main Inclusion Isoform:
ENSBTAT00000020634fB4543
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCGCCTCGGACAAAATC
R:
CTGTTATACATGAGGCGCTTGA
Band lengths:
146-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development