HsaEX0041134 @ hg38
Exon Skipping
Gene
ENSG00000176658 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr17:32745211-32749006:-
Coord C1 exon
chr17:32748936-32749006
Coord A exon
chr17:32745522-32745689
Coord C2 exon
chr17:32745211-32745285
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATTATTACCATCCTTTGCAGTTC
3' ss Score
6.93
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CTCTGTGCCTCAGACAAAATTCTGGAGTTTGATCGAGATTTTCGAATTCGACATTATGCAGGCGATGTAGT
Seq A exon
TTCTTCTTGGAATCTTTTATCCTACCCTCAACACTGAGTGAACCTTAGGCAAGTCACTTGACCTCCCTACGGATGAGACTGTTAGTTCCTGTATGTTGCTGTTTTGCTTTTATCTTAGGAATGCTGGATGATAAATACAGCTATCTTTTAAAAAGTCATCTTCTTGAG
Seq C2 exon
CTATTCTGTCATTGGTTTTATTGACAAAAATAAAGATACTTTATTTCAAGATTTCAAGCGCCTTATGTATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176658_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NO
C2:
PF0006316=Myosin_head=FE(3.7=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGCCTCAGACAAAATTCTG
R:
CTGTTATACATAAGGCGCTTGAA
Band lengths:
146-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development