MmuEX0030488 @ mm9
Exon Skipping
Gene
ENSMUSG00000035441 | Myo1d
Description
myosin ID [Source:MGI Symbol;Acc:MGI:107728]
Coordinates
chr11:80476543-80480147:-
Coord C1 exon
chr11:80480077-80480147
Coord A exon
chr11:80476862-80477026
Coord C2 exon
chr11:80476543-80476617
Length
165 bp
Sequences
Splice sites
3' ss Seq
GTTCTTACCATCCTTTGCAGTTC
3' ss Score
7.49
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
ACCTGTGCCTCAGACAAAATCCTGGAGTTTGATCGGGACTTTCGAATCCGTCATTATGCGGGTGACGTGGT
Seq A exon
TTCTCCTTGGACTCTCTCATACCCTGCACACTGAGTGGTACTTAGGCAAGTCACTTGACCTCCCCATGGATGGGACACTTAGTTCCTGTATGCAGCTGTTTTCCTTTTATCTTAGGCGTGCTGGATGATACATACAGCTATCTATTTTGAAGTCATCTTCTCGAG
Seq C2 exon
CTATTCTGCCATCGGTTTTATCGACAAAAATAAAGATACTTTATTTCAAGATTTCAAGCGCCTTATGTATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035441-'12-17,'12-16,13-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
PF0006316=Myosin_head=PD(0.8=33.3)
C2:
PF0006316=Myosin_head=FE(3.7=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTGCCTCAGACAAAATCC
R:
CTGTTATACATAAGGCGCTTGAA
Band lengths:
146-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: