RnoEX0057314 @ rn6
Exon Skipping
Gene
ENSRNOG00000003276 | Myo1d
Description
myosin ID [Source:RGD Symbol;Acc:621321]
Coordinates
chr10:68037187-68040817:-
Coord C1 exon
chr10:68040747-68040817
Coord A exon
chr10:68037668-68037832
Coord C2 exon
chr10:68037187-68037261
Length
165 bp
Sequences
Splice sites
3' ss Seq
GTTCTTACCATCCTTTGCAGTTC
3' ss Score
7.49
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
ACCTGTGCCTCAGACAAAATCCTGGAGTTTGATCGGGACTTTCGAATCCGGCATTATGCAGGTGATGTCGT
Seq A exon
TTCTCCTTGGACTCTCTCATACCCTGCACACTGAGTGGTACTTAGGCAAGTCACTTGACCTCCCCACGGATGGGACAATTAGTTCCTGTGTGCAGCTGTTTTGCTTTTCTCTTAGGAGTGCTGGATGATAAATACAGCTATCTATTTTGCAGTCATCTTCTTGAG
Seq C2 exon
GTATTCTGTCATCGGTTTCATTGACAAAAACAAAGATACTTTATTTCAAGACTTCAAGCGCCTCATGTATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003276_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
PF0006316=Myosin_head=PD(0.8=33.3)
C2:
PF0006316=Myosin_head=FE(3.7=100)
Main Inclusion Isoform:
ENSRNOT00000004609fB9242
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTGCCTCAGACAAAATCC
R:
CTGTTATACATGAGGCGCTTGA
Band lengths:
146-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]