HsaEX0041134 @ hg19
Exon Skipping
Gene
ENSG00000176658 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:7598]
Coordinates
chr17:31072229-31076024:-
Coord C1 exon
chr17:31075954-31076024
Coord A exon
chr17:31072540-31072707
Coord C2 exon
chr17:31072229-31072303
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATTATTACCATCCTTTGCAGTTC
3' ss Score
6.93
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CTCTGTGCCTCAGACAAAATTCTGGAGTTTGATCGAGATTTTCGAATTCGACATTATGCAGGCGATGTAGT
Seq A exon
TTCTTCTTGGAATCTTTTATCCTACCCTCAACACTGAGTGAACCTTAGGCAAGTCACTTGACCTCCCTACGGATGAGACTGTTAGTTCCTGTATGTTGCTGTTTTGCTTTTATCTTAGGAATGCTGGATGATAAATACAGCTATCTTTTAAAAAGTCATCTTCTTGAG
Seq C2 exon
CTATTCTGTCATTGGTTTTATTGACAAAAATAAAGATACTTTATTTCAAGATTTCAAGCGCCTTATGTATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176658-'14-16,'14-15,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NO
C2:
PF0006316=Myosin_head=FE(3.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGCCTCAGACAAAATTCTG
R:
CTGTTATACATAAGGCGCTTGAA
Band lengths:
146-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)