BtaEX0023540 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015527 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr19:17778048-17784719:+
Coord C1 exon
chr19:17778048-17778143
Coord A exon
chr19:17782781-17782897
Coord C2 exon
chr19:17784516-17784719
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGTTTTCATTCCCAGTCG
3' ss Score
10.12
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CTGCTGCAAGGAGGTTCGGACCAGATGCTACGTTCTCTGCACCTCCAGAAATCCTTGTCATCCTACAGCTACATCCATGTTGGAGCCCAGCTAAAG
Seq A exon
TCGTCTATCAATGATGCTGCAGAATTCAAAGTAGTAGCCGATGCCATGAAAGTAATTGGCTTCAAACCCGAGGAGATTCAAACAGCGTATAAAATCTTGGCTGCTATTCTTCACTTG
Seq C2 exon
GGGAATTTAAAGTTTGTAGTGGATGGTGATACTACTCTGATTGAGGACGGCAAGCTTGTATCTATCATCGCGGAATTGCTGTCCACCAAGACGGACATGGTGGAGAAAGCCCTCCTCTACCGGACGGTGGCTACGGGCCGTGACGTCATTGACAAGCAGCACACAGAGCAGGAAGCCAGCTACGGAAGGGATGCCTTCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015527_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGACCAGATGCTACGTTCT
R:
TGTGCTGCTTGTCAATGACGT
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development