HsaEX6021997 @ hg38
Exon Skipping
Gene
ENSG00000176658 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr17:32755492-32776029:-
Coord C1 exon
chr17:32775864-32776029
Coord A exon
chr17:32767636-32767752
Coord C2 exon
chr17:32755492-32755662
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTTTCATTTTCATCCCCAGTCT
3' ss Score
10.06
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AGTGAAGAATATGTTGCTTAAGTCCAACTGTGTTTTGGAAGCTTTTGGAAATGCCAAAACCAACCGTAATGACAACTCAAGCAGGTTTGGAAAATACATGGATATCAACTTTGACTTCAAGGGTGACCCTATTGGTGGGCATATCAATAACTACTTACTAGAAAAG
Seq A exon
TCTTCTATCAATGATGCTGCCGAATTCAGAGTTGTTGCTGATGCCATGAAAGTCATTGGCTTCAAACCTGAGGAGATCCAAACAGTGTATAAGATTTTGGCTGCTATTCTGCACTTG
Seq C2 exon
ATTGACTACTTCAACAATCAGATCATTGTTGACCTCGTGGAGCAACAGCACAAAGGGATCATTGCAATCCTTGATGATGCTTGCATGAATGTCGGCAAAGTCACCGATGAAATGTTTCTTGAAGCACTTAACAGTAAATTGGGCAAACACGCCCATTTTTCCAGCCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176658_MULTIEX1-4/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(34.6=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(8.3=100)
Main Skipping Isoform:
ENST00000394649fB4497
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTCAAGCAGGTTTGGAA
R:
TGGAAAAATGGGCGTGTTTGC
Band lengths:
258-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains