RnoEX0057302 @ rn6
Exon Skipping
Gene
ENSRNOG00000003276 | Myo1d
Description
myosin ID [Source:RGD Symbol;Acc:621321]
Coordinates
chr10:68049335-68052983:-
Coord C1 exon
chr10:68052888-68052983
Coord A exon
chr10:68050093-68050209
Coord C2 exon
chr10:68049335-68049538
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGTTTTCTGTTCATGTCTAGTCT
3' ss Score
5.76
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CTACTTCAGGGAGGTTCCGAGCAGATGCTGCATTCTCTACATCTGCAGAAATCACTCTCATCCTACAACTACATCCGTGTGGGGGCACAACTGAAG
Seq A exon
TCTTCCATCAATGATGCTGCAGAGTTCAAAGTTGTAGCTGATGCCATGAAAGTAATTGGATTCAAACCTGAGGAGATTCAAACAGTGTATAAAATTCTGGCTGCTATTCTTCACTTG
Seq C2 exon
GGAAATTTAAAATTTATAGTAGATGGTGACACGCCACTTATTGAGAATGGCAAAGTTGTATCTGTCATAGCAGAATTGCTCTCAACCAAGGCAGACATGGTGGAGAAAGCCCTGCTTTACCGGACGGTGGCCACAGGCCGTGACATCATTGACAAACAGCACACGGAACAGGAGGCTAGCTACGGCAGAGACGCCTTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003276-'17-14,'17-13,18-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
PF0006316=Myosin_head=FE(11.2=100)
C2:
PF0006316=Myosin_head=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTCAGGGAGGTTCCGAGC
R:
GTCAATGATGTCACGGCCTGT
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]