DreEX0006132 @ danRer10
Exon Skipping
Gene
ENSDARG00000036863 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr12:28382971-28386430:-
Coord C1 exon
chr12:28386335-28386430
Coord A exon
chr12:28383584-28383700
Coord C2 exon
chr12:28382971-28383174
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTACAATCTTGCAGTCG
3' ss Score
7.54
5' ss Seq
CTGGTTCAG
5' ss Score
-3.48
Exon sequences
Seq C1 exon
CTGGTGAAAGGAGCTCCAGATGCTCAGCTGCGATCCCTGCACATTCAGAGAGACCCCACAGCATATAACTACATTAAAGTGGGAGGCCAGCTAAAG
Seq A exon
TCGTCAATAAATGACAGTGCGGAATTTAAAGCTGTTGCTGATGCAATGAAAGTCATTGGATTTACTACAGAAGAGATTCAGACGGTCTACAAGATCCTGGCTACCATCTTGCATCTG
Seq C2 exon
GGGAATCTTAAGTTTGGAACTGATGGAGATGTGACTTTAATTGAGAACTCGAAGCTGGTGTCTGTGTTGGGGGATTTGCTTTCCACCAAAGAGGAGAATGTAGAGAAGGCCATGCTCTATCGTACGGTAGCCACTGGCCGCGATGTCATCGACAAACAACACACTCATCAAGAGGCCAGTTATGGCCGTGATGCCTTAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036863-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATCCCTGCACATTCAGAG
R:
CTGGCCTCTTGATGAGTGTGT
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]