GgaEX6027162 @ galGal4
Exon Skipping
Gene
ENSGALG00000000674 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr27:1448705-1450175:+
Coord C1 exon
chr27:1448705-1448800
Coord A exon
chr27:1449561-1449677
Coord C2 exon
chr27:1449972-1450175
Length
117 bp
Sequences
Splice sites
3' ss Seq
CAAACATCTCCTTCCTGCAGGGT
3' ss Score
10.2
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
Exon sequences
Seq C1 exon
CTCCTCCAGGGGGGGTCTGACCAGATGCTGCGCTCTCTACATCTGCAGAAGGATGCGTCTGCATACAGCTACATCTCTCCTGGAGCACAGCTCAAG
Seq A exon
GGTTCCATCAACGATGGTGCCGAGTTCAAGGCTGTGGCTGATGCCATGAAGGTGATAGGATTCAAGCAAGAGGAGATTCAGACTGTCTACAAAATCGTGGCAGCCATTCTTCATTTG
Seq C2 exon
GGGAACTTGAAGTTTTCCGTGGATGGCGATACGCCTCTGATAGAGAACAGCAAGGCTGTGTCCATCATTGCAGACCTACTGTCAACAAAATCTGAGATGGTGGAGAAGGCCCTTTTGTTCCGGACTGTCGCTACGGGCCGGGATGTCATCGACAAGCAGCACACCGAGCAAGAAGCCACCTATGGCAGAGATGCCTTTGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000674-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCTCTCTACATCTGCAG
R:
CATAGGTGGCTTCTTGCTCGG
Band lengths:
253-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]