BtaEX0023541 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015527 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr19:17784516-17794272:+
Coord C1 exon
chr19:17784516-17784719
Coord A exon
chr19:17786903-17787017
Coord C2 exon
chr19:17794102-17794272
Length
115 bp
Sequences
Splice sites
3' ss Seq
ATTGATTCCTTTTCTTGCAGCTT
3' ss Score
8.25
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GGGAATTTAAAGTTTGTAGTGGATGGTGATACTACTCTGATTGAGGACGGCAAGCTTGTATCTATCATCGCGGAATTGCTGTCCACCAAGACGGACATGGTGGAGAAAGCCCTCCTCTACCGGACGGTGGCTACGGGCCGTGACGTCATTGACAAGCAGCACACAGAGCAGGAAGCCAGCTACGGAAGGGATGCCTTCGCCAAG
Seq A exon
CTTTGAGCAATTCTGCATCAATTACTGCAACGAGAAGCTCCAGCAGCTGTTTATTCAGCTGGTCCTGAAGCAAGAACAGGAGGAGTACCAGCGGGAAGGGATCCCCTGGAAGCAT
Seq C2 exon
ATTGATTACTTCAACAATCAGATCATTGTGGACCTGGTGGAGCAGCAGCACAAGGGGATCATTGCCATCCTGGATGACGCCTGCATGAACGTCGGCAAAGTCACTGATGAAATGTTCCTAGAAGCACTTAACAGCAAACTGGGCAAGCACGGCCATTTTTCTAGCCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015527_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.0=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAATTGCTGTCCACCAAGA
R:
TCATCAGTGACTTTGCCGACG
Band lengths:
244-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development