GgaEX6027160 @ galGal3
Exon Skipping
Gene
ENSGALG00000000674 | MYO1D
Description
NA
Coordinates
chr27:1399583-1400354:+
Coord C1 exon
chr27:1399583-1399728
Coord A exon
chr27:1399814-1399928
Coord C2 exon
chr27:1400184-1400354
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCGATGTTTTTGCAGTTT
3' ss Score
8.75
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GCTATTTATGAGCGCCTCTTCTGTTGGATTGTGACACACATCAACGATGTGATTGAGGTGAAGAACTACGACACGACAGTGCACGGGAAGAACACGGTCATTGGCGTCCTGGATATCTATGGCTTTGAGATATTTGACAACAACAG
Seq A exon
TTTTGAACAGTTTTGCATTAATTACTGCAACGAGAAGCTGCAGCAGCTCTTCATTCAGCTGGTTCTGAAGCAGGAGCAGGAGGAGTACCAGCGGGAGGGCATTCCCTGGAAGCAC
Seq C2 exon
ATCGATTACTTTAACAACCAGGTGATTGTGGACCTGGTGGAGCAGCAGCACAAAGGAATCATTGCCATCCTGGACGACGCCTGCATGAACGTAGGGAAAGTGACGGACGAGATGTTCCTGGAGGCTCTGAACAGCAAGCTGGGGAAGCACGCACATTTCTCCAGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000674-'9-14,'9-13,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
PF0006316=Myosin_head=FE(5.6=100)
C2:
PF0006316=Myosin_head=FE(11.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCCTCTTCTGTTGGATTG
R:
ATCTCGTCCGTCACTTTCCCT
Band lengths:
249-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]