RnoEX6048830 @ rn6
Exon Skipping
Gene
ENSRNOG00000003276 | Myo1d
Description
myosin ID [Source:RGD Symbol;Acc:621321]
Coordinates
chr10:68045030-68048254:-
Coord C1 exon
chr10:68048109-68048254
Coord A exon
chr10:68047918-68048032
Coord C2 exon
chr10:68045030-68045200
Length
115 bp
Sequences
Splice sites
3' ss Seq
ACATTCCCCATCTCCCGTAGCTT
3' ss Score
7.54
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GCAATATATGAGCGCCTCTTTTGTTGGATTGTTACTCGCATCAATGACATCATCGAGGTCAAGAACTACGACACCACAGTACATGGGAAAAACACAGTTATTGGCGTCTTGGATATCTATGGCTTTGAAATCTTTGACAACAACAG
Seq A exon
CTTCGAGCAGTTCTGCATTAACTACTGCAATGAGAAGCTGCAGCAGCTGTTCATTCAGCTGGTGCTGAAGCAGGAGCAAGAGGAGTACCAGCGGGAAGGAATCCCCTGGAAACAC
Seq C2 exon
ATTGATTACTTCAACAACCAGATCATTGTGGACCTCGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGCGTGTATGAATGTTGGCAAAGTCACTGATGGAATGTTCCTCGAGGCCCTTAACAGTAAATTGGGCAAACATGGTCATTTTTCCAGCCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003276-'21-22,'21-20,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACACCACAGTACATGGGA
R:
TCGGCTGGAAAAATGACCATGT
Band lengths:
247-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]