MmuEX6088154 @ mm9
Exon Skipping
Gene
ENSMUSG00000035441 | Myo1d
Description
myosin ID [Source:MGI Symbol;Acc:MGI:107728]
Coordinates
chr11:80484351-80488464:-
Coord C1 exon
chr11:80488319-80488464
Coord A exon
chr11:80488116-80488230
Coord C2 exon
chr11:80484351-80484521
Length
115 bp
Sequences
Splice sites
3' ss Seq
ACATTTTCTGTCTCCTGTAGCTT
3' ss Score
10.77
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GCAATATATGAGCGCCTCTTTTGTTGGATTGTTACTCGCATCAATGACATCATCGAGGTCAAGAACTATGACACCACGATACATGGGAAAAACACGGTTATTGGTGTCTTGGATATCTATGGCTTTGAAATCTTTGACAACAACAG
Seq A exon
CTTTGAGCAGTTCTGCATTAACTACTGCAACGAGAAACTGCAGCAGCTCTTCATTCAGCTGGTGCTGAAGCAGGAGCAAGAGGAGTACCAGCGGGAGGGCATCCCTTGGAAACAC
Seq C2 exon
ATTGATTACTTCAACAACCAGATCATTGTGGACCTCGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGCGTGTATGAATGTTGGCAAAGTCACTGACGGAATGTTCCTTGAGGCCCTTAACAGTAAATTGGGCAAACATGGTCATTTTTCCAGCCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035441-'8-14,'8-11,9-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(11.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCGCCTCTTTTGTTGGAT
R:
TCCGTCAGTGACTTTGCCAAC
Band lengths:
249-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: