DreEX6069700 @ danRer10
Exon Skipping
Gene
ENSDARG00000036863 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr12:28381129-28381797:-
Coord C1 exon
chr12:28381652-28381797
Coord A exon
chr12:28381445-28381559
Coord C2 exon
chr12:28381129-28381299
Length
115 bp
Sequences
Splice sites
3' ss Seq
ATCTTCTTTGTTTTCTCTAGCTT
3' ss Score
9.59
5' ss Seq
CATGTGGGT
5' ss Score
2.93
Exon sequences
Seq C1 exon
GCCATCTATGAGCGCCTTTTCTGCTGGATTGTGGGACGAATCAATGACATCATTGAGGTGAAAAACTACGACGCTCGAGTTCATGGTAAGAACACAGTCATTGGAGTTCTGGACATCTATGGCTTTGAGATCTTTCAGAATAACAG
Seq A exon
CTTTGAGCAGTTCTGTATAAATTACTGTAATGAGAAACTGCAGCAGCTCTTCATTCAGCTGGTGCTAAAACAAGAGCAGGAAGAATACCAGCGAGAAGGCATCCCTTGGAAACAT
Seq C2 exon
ATTGACTACTTCAACAATCAGATCATCGTAGATCTCGTGGAACAGCAGCATAAGGGCATTTTTGCAGTGCTGGATGAAGCATGCATGAATGTGGGGAAGGTGACGGATGAGATGTTCCTACAGGCCCTCAATGGGAAACTGGCCAAACATGCCCACTACACTAGCCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036863-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAGCGCCTTTTCTGCTGG
R:
CACCTTCCCCACATTCATGCA
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]