BtaEX0023569 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003626 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:26136636-26245993:-
Coord C1 exon
chr2:26245917-26245993
Coord A exon
chr2:26223854-26223999
Coord C2 exon
chr2:26136636-26136701
Length
146 bp
Sequences
Splice sites
3' ss Seq
GTCCTGCTTTTGTCTGGTAGGTC
3' ss Score
9.47
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGTCTCAGCTCAACTCACCAGTACACGTCTACGGAGAAACACATCTGTTGGCACCCCATTCTGGATGGCCCCTGAG
Seq A exon
GTCATTGCTTGTGAGCAGCAGTATGACTCTTCCTATGACGCTCGCTGTGACGTCTGGTCCTTGGGGATCACAGCTATTGAACTGGGGGACGGAGATCCTCCCCTCTTTGACATGCATCCTGTGAAAACGCTCTTTAAGATTCCAAG
Seq C2 exon
AAATCCTCCACCTACTTTACTTCATCCGGAAAAATGGTGTGAAGAATTCAACCACTTCATTTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003626_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(9.4=100)
A:
PF0006920=Pkinase=FE(18.0=100)
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTCAGCTCAACTCACCA
R:
AATGAAGTGGTTGAATTCTTCACACC
Band lengths:
138-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development