DreEX6034848 @ danRer10
Exon Skipping
Gene
ENSDARG00000006892 | myo3b
Description
myosin IIIB [Source:ZFIN;Acc:ZDB-GENE-070706-2]
Coordinates
chr9:3863092-3885524:-
Coord C1 exon
chr9:3885448-3885524
Coord A exon
chr9:3880936-3881081
Coord C2 exon
chr9:3863092-3863157
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTTTGGTTGTCTGTGTGCAGGTG
3' ss Score
9.75
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGTCTCAGCTCAGTTGACAAGTGCCCGTTTGCGCCGAAACACATCAGTGGGAACCCCATTCTGGATGGCTCCTGAG
Seq A exon
GTGATAGCGTGTGAACAGCAGTATGACTACTCGTATGACGCCCGCTGTGATGTGTGGTCGCTGGGCATCACTGCTATAGAGCTGGCAGACGGAGACCCACCACTGGCAGAGATGCACCCGGTCAAAGCACTCTTCAAAATACCACG
Seq C2 exon
GAACCCGTCTCCTACCCTCCGCCATCCTGAGCAATGGTGCAGAAGCTTCAGTCACTTCATTGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006892-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.132
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(9.4=100)
A:
PF0006920=Pkinase=FE(18.0=100)
C2:
PF0006920=Pkinase=PU(46.5=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTCAGTTGACAAGTGCC
R:
TGTGCAATGAAGTGACTGAAGCT
Band lengths:
138-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]