MmuEX6102036 @ mm9
Exon Skipping
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:69946679-70027665:+
Coord C1 exon
chr2:69946679-69946755
Coord A exon
chr2:69964904-69965049
Coord C2 exon
chr2:70027600-70027665
Length
146 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTTTTTGTCTGATAGGTC
3' ss Score
10.76
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGTCTCTGCTCAACTTACAAGCACACGGCTGCGGAGAAACACATCAGTTGGGACCCCATTCTGGATGGCTCCTGAG
Seq A exon
GTCATTGCTTGCGAGCAGCAGTATGACTCGTCCTATGACGCTCGTTGTGACGTCTGGTCCTTGGGCATCACAGCCATTGAGCTGGGAGATGGAGACCCTCCCCTCTTTGAAATGCATCCTGTGAAAATGCTCTTTAAGATACCAAG
Seq C2 exon
AAACCCTCCACCCACTTTGCTGCACCCTGACAGCTGGTGTGAGGAATTTAACCACTTCATTTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-'7-10,'7-8,8-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.3=100)
A:
PF0006920=Pkinase=FE(18.0=100)
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTCTGCTCAACTTACAAGC
R:
AATGAAGTGGTTAAATTCCTCACACC
Band lengths:
138-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: