GgaEX1038119 @ galGal4
Exon Skipping
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17897629-17931770:-
Coord C1 exon
chr7:17931694-17931770
Coord A exon
chr7:17918806-17918951
Coord C2 exon
chr7:17897629-17897694
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTTGTTTTCTGATAGGTC
3' ss Score
10.07
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTGTTTCAGCCCAGCTCACCAGCACACGGCTTCGTAGAAACACCTCAGTAGGAACACCCTTTTGGATGGCTCCTGAG
Seq A exon
GTCATTGCTTGTGAACAGCAATATGACTACTCATATGATGCTCGATGTGACGTATGGTCTTTGGGAATAACAGCTATTGAACTCGGGGATGGAGACCCTCCTTTATTTGACATGCATCCGGTGAAAACTCTTTTTAAAATTCCAAG
Seq C2 exon
AAACCCTCCTCCTACTTTGCTACATCCTGAAAAATGGTGCAGGGGATTCAACCATTTCATTTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602-'12-14,'12-11,16-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.072
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.7=100)
A:
PF0006920=Pkinase=FE(18.0=100)
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Skipping Isoform:
ENSGALT00000015648fB9716
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTCAGCCCAGCTCACC
R:
AATGAAATGGTTGAATCCCCTGC
Band lengths:
138-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]