RnoEX6017350 @ rn6
Exon Skipping
Gene
ENSRNOG00000030022 | Myo3b
Description
myosin IIIB [Source:RGD Symbol;Acc:1560313]
Coordinates
chr3:56368098-56458746:+
Coord C1 exon
chr3:56368098-56368174
Coord A exon
chr3:56387408-56387553
Coord C2 exon
chr3:56458681-56458746
Length
146 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTTTTTGTCTGATAGGTC
3' ss Score
10.76
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGTCTCTGCTCAACTTACAAGCACACGGCTACGGAGAAACACATCGGTTGGGACCCCATTCTGGATGGCTCCAGAG
Seq A exon
GTCATTGCTTGTGAGCAGCAGTATGACTCGTCCTATGACGCTCGCTGTGACGTCTGGTCCTTGGGCATCACAGCCATCGAGCTGGGCGATGGAGACCCTCCCCTCTTTGAAATGCATCCTGTGAAGATGCTCTTTAAGATCCCAAG
Seq C2 exon
AAACCCTCCACCCACTTTGCTGCACCCGGACAACTGGTGTGAGGAGTTTAACCACTTCATTTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030022-'5-6,'5-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(9.4=100)
A:
PF0006920=Pkinase=FE(18.0=100)
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTCTGCTCAACTTACAAGC
R:
AATGAAGTGGTTAAACTCCTCACACC
Band lengths:
138-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]