BtaEX0024623 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032369 | NMI
Description
N-myc (and STAT) interactor [Source:HGNC Symbol;Acc:HGNC:7854]
Coordinates
chr2:44946429-44950481:+
Coord C1 exon
chr2:44946429-44946615
Coord A exon
chr2:44949228-44949334
Coord C2 exon
chr2:44950080-44950481
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTTAAAAATTTATTTCTAGTTG
3' ss Score
6.28
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTTCACGTAGGAGTGTCTAAAATGAAAATCAACGTTACCGACATTCCTGATGAACTGCCAGAAAGTCAGATGAGAGACAAGCTAGAATTGAGTTTCTCTAAGTCTCGCAACGGAGGCGGAGAAGTGGAGTACGTGGAGTATAACAAGCAGACCCGGAGCGCCCTCATCACCTTTGTGGAAAGTGGAG
Seq A exon
TTGCTGACAAGATTTTGAAAATGAAAGACTATCCTCTTTATATAAATCAAAACTGCCATAGAGTTACAGTTTATCCATACACAGAAACACACTTGAAAAAGTTTCAG
Seq C2 exon
GTATTTTCAGGAGTATCTAAGAGGACAGTGCTTCTGACTGGACTGAAACACCTTCAGACGACGGATGAAGAAGTTGTAGAGGATTTCATTAGCATTCACTTTCAGCGGGAGAAGAATGGAGGTGGAGAAGTCGAGGTGGTCAAATGTTCCCTCGGGCAACCTCACACAGCATACTTTGAAGAATAGACTCATGGAATCCTATGAAAGTTAGAGCTTCTGAACCCAACTTCCTGTCAGTGCTTGACAAAAATAAATGTCCCTTTCCTTAAAAAAAATTAAAAATGTAATTCTTTAGTATTCGTTTATTCTTAGATACAAAATATATTTCTGTGATTTTAAATTCTTTGTTTTCAACTGTGCTGCATGTTTACAAATGCAGTAACTGTATTAAAAGTTTTGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032369_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF113763=DUF3179=FE(30.1=100),PF072928=NID=PD(47.7=66.7),PF072928=NID=PU(10.0=14.3)
A:
PF113763=DUF3179=PD(1.0=5.6),PF072928=NID=FE(38.9=100)
C2:
PF072928=NID=PD(48.9=71.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGAAGTGGAGTACGTGGA
R:
AGTATGCTGTGTGAGGTTGCC
Band lengths:
246-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development