HsaEX0043177 @ hg38
Exon Skipping
Gene
ENSG00000123609 | NMI
Description
N-myc and STAT interactor [Source:HGNC Symbol;Acc:HGNC:7854]
Coordinates
chr2:151270465-151275670:-
Coord C1 exon
chr2:151275484-151275670
Coord A exon
chr2:151271626-151271732
Coord C2 exon
chr2:151270465-151270875
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTTTTGCTTTTAGTGG
3' ss Score
8.25
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTTTATGTAGAAGTTTCTAAAATGAAAATCAATGTTACTGAAATTCCTGACACATTGCGTGAAGATCAAATGAGAGACAAACTAGAGCTGAGCTTTTCAAAGTCCCGAAATGGAGGCGGAGAGGTGGACCGCGTGGACTATGACAGACAGTCCGGGAGTGCAGTCATCACGTTTGTGGAGATTGGAG
Seq A exon
TGGCTGACAAGATTTTGAAAAAGAAAGAATACCCTCTTTATATAAATCAAACCTGCCATAGAGTTACTGTTTCTCCATACACAGAAATACACTTGAAAAAGTATCAG
Seq C2 exon
ATATTTTCAGGAACATCTAAGAGGACAGTGCTTCTGACAGGAATGGAAGGCATTCAAATGGATGAAGAAATTGTGGAGGATTTAATTAACATTCACTTTCAACGGGCAAAGAATGGAGGTGGAGAAGTAGATGTGGTCAAGTGTTCTCTAGGTCAACCTCACATAGCATACTTTGAAGAATAGACTTAACAGAATCATGAAAACTATAGCTTTTTAACCCGGATTACTGTAAATGTTTGACAAAAATGAATATGCTTTTCCTTAAAAAATGAAAACTTTAATTTTTACCATCCATTTATGTTTAGATACAAAACTTATTTCCATGTTTCTGAATCTTCTTTGTTTCAAATGGTGCTGCATGTTTTCAACTACAATAAGTGCACTGTAATAAAAAGTTTTGTTTATAGATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123609_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072928=NID=PD(47.7=66.7),PF072928=NID=PU(10.1=14.3)
A:
PF072928=NID=FE(39.3=100)
C2:
PF072928=NID=PD(48.3=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGTGAAGATCAAATGAGAGACA
R:
CTCCACCTCCATTCTTTGCCC
Band lengths:
256-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development