MmuEX0031905 @ mm10
Exon Skipping
Gene
ENSMUSG00000026946 | Nmi
Description
N-myc (and STAT) interactor [Source:MGI Symbol;Acc:MGI:1928368]
Coordinates
chr2:51948487-51952628:-
Coord C1 exon
chr2:51952442-51952628
Coord A exon
chr2:51949984-51950090
Coord C2 exon
chr2:51948487-51948776
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGGTTTACTTTCAGTTG
3' ss Score
8.83
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTTCATGTGGACATTTCTAAAATGAAGATCAATGTTACGGGAATTCCCGATGAGCTGTCTGAGGAGCAGACAAGGGACAAACTGGAGCTGAGCTTCTGTAAGTCCAGGAATGGCGGCGGCGAAGTGGAAAGCGTGGATTATGACAGGAAGTCCAGAAGCGCTGTCATCACTTTTGTGGAAACTGGCG
Seq A exon
TTGTTGACAAGATTTTGAAAAAGAAAACCTATCCTCTCTACATGAATCAGAAGTGCCATAGCGTTGCTGTTTCTCCATGTATAGAACGATGCTTAGAAAAGTACCAG
Seq C2 exon
GTGTTTTCAGCTGTGTCCAAAAAGACAGTGCTTCTGACCGGATTAGAAGGCATTCCTGTAGATGAGGAGACTGGGGAGGACTTACTCAACATCCACTTCCAACGGAAGAATAACGGAGGGGGAGAAGTGGAGGTGGTCAAGTGTTCTCTAGACCAGTCCTTCGCAGCGTATTTTAAAGAAGAGGCCAGAGAAACCATATGAAACTTATAGCCTTGAACTAAAATCACTGCCAACATTTACAAAATATTGTTTTCCATAAAACAAAAAATTAATTTGTCAGTGTCTTCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026946_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.092 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072928=NID=PD(47.7=66.7),PF072928=NID=PU(10.1=14.3)
A:
PF072928=NID=FE(39.3=100)
C2:
PF072928=NID=PD(48.3=64.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGCAGACAAGGGACAA
R:
CCACTTCTCCCCCTCCGTTAT
Band lengths:
258-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types