GgaEX1039868 @ galGal4
Exon Skipping
Gene
ENSGALG00000012480 | NMI
Description
N-myc (and STAT) interactor [Source:HGNC Symbol;Acc:HGNC:7854]
Coordinates
chr7:34603350-34607340:-
Coord C1 exon
chr7:34607151-34607340
Coord A exon
chr7:34606345-34606451
Coord C2 exon
chr7:34603350-34605543
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTCTCATTCTCCCTTACAGCAA
3' ss Score
11.13
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTCCACATCACAATTTCTGGAAAGAAGATCAGTGTTTCAGAAATCCCTGAGCTACCAATTCCTGATGAGTGGATGAGAGACAAATTAGAGCTGAATTTCTACAAATCCGAACATGGAGGAGGAGAAGTAGAAAATATAAAATATGACAAGAGGTCCAGAACAGCTGTTATTACATTCACTAGACCTGGAG
Seq A exon
CAACGGCCAGCATTGCGAGAGGTACCAGATACCCTTTCTATGTAAATGGAAGGTGCCATAGACTTTCTGTGTCCCCAAGCACTGATGGACACTTGGAAAAGCTTCAG
Seq C2 exon
CTCTTTTCTGGTATTTCTACGAAGACCATTCTACTGAAAGGAATTAAAGAGACTGAAGATGATGAGGAAAGCGTGCAGGATATGATTGAAATTCATTTCCAGAAGCCTAGTAACGGTGGTGGGGAAACAGAGAATATCAAATATGTATCAAAAGGAGCTACGTGGGTTTGTTTTGAAGAGGACGGTTAGAATGCCATACAGAAAATTGTAGATCTCTCTCAGAAGTTCTGAGCTTTTGCTTCATCAGAGGGATAAATTACACCAGTGGTTCTTGTTTAGTTGTGCCTTAATGTTTAGAAATTGAAAAAGAGGAACTACCTTTCTGATCTGTTTAATGGCATAAACCTTGAACAGAAATTCACTAAAACTTAATGCTTTGTGTCCCAGGTGTTCCTGATGAAAGTCATGGAGAAAGCCTTCACCTGCACATGTAATTCAATCTAAGATCACTTCTTGCAAGTTCACAGACTTTGTATCTTGTCCATTTTATATGGATTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012480-'10-10,'10-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.339
Domain overlap (PFAM):
C1:
PF072928=NID=PD(48.3=67.2),PF072928=NID=PU(10.1=14.1)
A:
PF072928=NID=FE(39.3=100)
C2:
PF072928=NID=PD(48.3=68.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAACATGGAGGAGGAGAA
R:
ACAAACCCACGTAGCTCCTTT
Band lengths:
256-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]