DreEX6038988 @ danRer10
Exon Skipping
Gene
ENSDARG00000100275 | NMI
Description
N-myc (and STAT) interactor [Source:HGNC Symbol;Acc:HGNC:7854]
Coordinates
chr9:56871405-56872814:+
Coord C1 exon
chr9:56871405-56871597
Coord A exon
chr9:56872022-56872125
Coord C2 exon
chr9:56872414-56872814
Length
104 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTTCAGTGG
3' ss Score
7.9
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTCCACATCACAGTGTCCAAGAAGACAGTGAGGTTCCAGTTCCAGAAGGCTCCTCCCCCTTTCCCTGCTGAGCGAATCAGGGACCGGCTGGAGCTGAGCTTCTGCAAAGCCAATCGGGGAGGAGGAGAAGTGGAGGAGCTGCATTATAATGAAGAGGGCGGAGCTGGCACAGTCACCTTCAGCAGCAGTGCAG
Seq A exon
TGGCGGAGCGTCTGGTTCTGCGGGGACGCTACACTGTGGACGTCTGTGGGGAAGCAGATGTGGAAATCCTGCCGGTGTACGAGTACCAGCTGCGCAAGTTCCAG
Seq C2 exon
ACGTTCTCCGGCGTCGCGGGCCGCACAGTGCTGCTGAAGGGGATCCAGGCTCTGCTGGATGAGGAGGACCTGCAGGATCACCTGGAGATCCACTTCCAGAAGCCCAGCAACTACGGCGGGGAGGTGGAGAACATCCGCTACGTGCCGGACAGAGAGACGCTGACCGCCTTCTTCAGCGAGGACCACACCACAGCCGACCCCTGACCCCTGACCCCTGACCAGCGGAGGAGCGCTGTGATCCAGCTTCATCATCCACATCTCTCTGGGCTCTCTGGGTTCTTCTGCTTCTGTCTGCTGCTGGATCATCATCTCTGAGCTCAGCATCATCAGACACCGACACGTCCATCATGAGGGGTTGAGTCTTCATCATGAGTCTTCATCATCAGATCAGTCATGTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100275-'8-10,'8-8,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF072928=NID=PD(48.9=67.7),PF072928=NID=PU(10.3=13.8)
A:
PF072928=NID=FE(39.1=100)
C2:
PF072928=NID=PD(48.3=61.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCCAGTTCCAGAAGGCT
R:
GATCCTGCAGGTCCTCCTCAT
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]