BtaEX0024742 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012121 | NOXA1
Description
Bos taurus NADPH oxidase activator 1 (NOXA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102075]
Coordinates
chr11:105705868-105707208:-
Coord C1 exon
chr11:105707074-105707208
Coord A exon
chr11:105706707-105706814
Coord C2 exon
chr11:105705868-105705924
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCTGCCCTGGCCCCCTCCAGAAG
3' ss Score
5.96
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGCTGTTCAACATGGCTGCGGTGCAGAGCCAGCTGGGGCTCTGGGCAGAGGCTGCCTGCAGCCTGGGGGACGCCATCTCCAAGGGGCCGGAAGGGGCCCGCAACGGCCTGGACGTCGCCCTGGGCCAAGTGCAG
Seq A exon
AAGCAGGTCCCCCTGCAGCCTCGGCAGGTCCCCAGGGGTGAGGTCTTCCGGCCCCATAGGCGGCACGTGGAGCACCTGGAGCCTGTGGATTTCCTGGGCAAGGCCAAG
Seq C2 exon
GTGCTGGCCTCCGCCCTCCCCACCGACTCCCACGGGGTCGCCCCGCCGCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012121-'6-10,'6-7,7-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.444 C2=0.711
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGTTCAACATGGCTGC
R:
GTGGGAGTCGGTGGGGAG
Band lengths:
168-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development