GgaEX6014732 @ galGal3
Exon Skipping
Gene
ENSGALG00000008952 | NOXA1
Description
NA
Coordinates
chr17:1299230-1301289:+
Coord C1 exon
chr17:1299230-1299364
Coord A exon
chr17:1300417-1300524
Coord C2 exon
chr17:1301230-1301289
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATCTTCTTCCCACGCCCTAGAAT
3' ss Score
6.27
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTGCTGTACAGCACTGCTGCCACGCAGTGCCGGCTGCAGCAGTGGCAGGAGGCCAGAGACACCCTAGAGAAGGCCGTCGTGTGGAGACCTGAAGGAAGATCAGCAACACTGGCCCTGGCCCTTGAGCGAGTGCAG
Seq A exon
AATCATCAATTTTTAGAGCCTATGCAGGTTCCCCCTGGGGAATTTTTCAGACCACGAAAGAAGGAAGTTGAACAGCTGGATTCAAAAGATTTCCTGGGTAAACCCAAG
Seq C2 exon
GTGATCTCATCCATCATTCCCAATGATGAGTACATTGGCTTTGAACCTCTCAGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008952-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCAGTGGCAGGAG
R:
CTGTGGCCTGAGAGGTTCAAA
Band lengths:
162-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]