RnoEX6015792 @ rn6
Exon Skipping
Gene
ENSRNOG00000009286 | Noxa1
Description
NADPH oxidase activator 1 [Source:RGD Symbol;Acc:1306687]
Coordinates
chr3:2303206-2304627:-
Coord C1 exon
chr3:2304493-2304627
Coord A exon
chr3:2304198-2304305
Coord C2 exon
chr3:2303206-2303259
Length
108 bp
Sequences
Splice sites
3' ss Seq
ACCTGGTTTACATGTTCCAGAAA
3' ss Score
5.36
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTCCTATATAACATGGCATCAGTGCAGTGCCAGGCAGGGCTCTGGACCAAGGCTGCCAATACTCTAGTAGAAGCAATCTCCAAACGGCCAGAGGGGGCCCAAGACACCCTGGAGGCTGCCATGGACAAAGTGCAG
Seq A exon
AAACAGGTACCACTGCAGCTGCGGCAAGTGCCCAAGGGGGAGGTCTTCCAGCCTCCTCGGCGATACCTGAAACATCTGGAGCCCATGGATTTCCTCGGCAAGGCTAAG
Seq C2 exon
GTGGTGGCTTCTGTCATCCCTGATGACCACAACTCGGACATCCAGCCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009286-'4-5,'4-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=0.056 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTATATAACATGGCATCAGTG
R:
CTGAGGCTGGATGTCCGAGTT
Band lengths:
186-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]