HsaEX0043448 @ hg19
Exon Skipping
Gene
ENSG00000188747 | NOXA1
Description
NADPH oxidase activator 1 [Source:HGNC Symbol;Acc:10668]
Coordinates
chr9:140323334-140325295:+
Coord C1 exon
chr9:140323334-140323468
Coord A exon
chr9:140323728-140323835
Coord C2 exon
chr9:140325236-140325295
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGGATACCCACCCCCTCCAGAGA
3' ss Score
5.11
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTGCTACACAATGTGGCGTCGGCACAGTGCCAGCTGGGGCTCTGGACAGAGGCGGCCAGCAGCCTAAGGGAGGCCATGTCCAAGTGGCCGGAGGGGTCCCTGAATGGCCTGGACTCAGCCCTGGACCAAGTGCAG
Seq A exon
AGACGGGGCTCACTGCCGCCACGGCAGGTCCCCAGGGGCGAGGTCTTCCGGCCCCACCGGTGGCACCTGAAGCACTTGGAGCCCGTGGATTTCCTGGGCAAGGCCAAG
Seq C2 exon
GTGGTGGCCTCTGCCATCCCCGACGACCAGGGCTGGGGCGTCCGCCCTCAGCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188747_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.200 A=0.417 C2=0.800
Domain overlap (PFAM):
C1:
PF131761=TPR_7=WD(100=75.6)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACAATGTGGCGTCGGC
R:
CCTGGTCGTCGGGGATGG
Band lengths:
163-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)