MmuEX6099409 @ mm10
Exon Skipping
Gene
ENSMUSG00000036805 | Noxa1
Description
NADPH oxidase activator 1 [Source:MGI Symbol;Acc:MGI:2449980]
Coordinates
chr2:25089174-25090626:-
Coord C1 exon
chr2:25090492-25090626
Coord A exon
chr2:25090170-25090277
Coord C2 exon
chr2:25089174-25089221
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTTTACATGTTCCATCTCAGAAA
3' ss Score
6.81
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTCCTATACAACATGGCATCAGCACAGTGCCAGGCAGGGCTCTGGACCAAGGCTGCCAATACTCTAGTGGAGGCAATCTCCAAATGGCCAGAGGGGGCTCAAGACATCCTGGACATTGCCATGGACAAAGTGCAG
Seq A exon
AAACAGGTACCCCTACAGCTACAGCAAGTGCCCAAGGGTGAGGTCTTCCAGCCTCCCAGGCGATACCTAAAACATCTGGAGCCCATGGATTTCCTTGGCAAGGCTAAG
Seq C2 exon
GTGGTGGCTTCTGTCATTCCTGATGACCACAACGCCCAGCCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036805-'8-9,'8-6,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.097 C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTATACAACATGGCATCAGCAC
R:
CTGAGGCTGGGCGTTGTG
Band lengths:
179-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types