BtaEX0025061 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003183 | NTN4
Description
Bos taurus netrin 4 (NTN4), mRNA. [Source:RefSeq mRNA;Acc:NM_001102203]
Coordinates
chr5:60428488-60499769:-
Coord C1 exon
chr5:60499240-60499769
Coord A exon
chr5:60452810-60453088
Coord C2 exon
chr5:60428488-60428614
Length
279 bp
Sequences
Splice sites
3' ss Seq
CGTTTTCTTTTTCTTTACAGGTT
3' ss Score
12.49
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCTGTGAAAAAGCCTGTAACCCTCGGATGGGAAATTTGGCTTTAGGGAGAAAACTCTGGACAGACACCACCTGTGGTCAGAACGCCACTGAACTGTACTGCTTCTACAGTGAGAACACTGATCTGACTTGTCAGCAGCCCAAATGTGACAAATGCAATGCTGCCCAGCCTCACCTGGCTCACCTACCAGCTGCCATGGCAGACTCCTCCTTCAGGTATCCTCGCACGTGGTGGCAGTCTGCTGAGGATGTACACAGAGAAAAGATCCAGCTAGACCTGGAAGCTGAATTCTACTTCACTCATCTAATTATGGTGTTCAAGTCTCCCCGGCCGGCAGCCATGGTGCTGGACCGGTCCCAGGACTTTGGAAAAACATGGAAGCCTTACAAGTACTTTGCAACTAACTGCTCAGCTACATTTGGCCTGGAAGACGATGTTGTCAAGAAGGGAGCTATTTGCACTTCTAGATACTCCAATCCTTTTCCCTGCACTGGAGGAGAG
Seq A exon
GTTATTTTCAGAGCTTTGTCACCACCGAATGATATGGAGAACCCTTACGGTGCCAAGGTGCAGGAGCAGCTGAAGATCACCAACCTCCGTGTGCAGCTGCTAAAACGACAGTCTTGTCCCTGTCAGAGAAACCACTTGAATGCAGAGCCTCAACATTTTACCCACTATGCAATCTATGATTTCATTGTTAAGGGCAGCTGCTTCTGTAACGGCCATGCTGACCAGTGCATACCTATTGATGGCTTCAGACCTGTCAAGGCCCCTGGAGCATTCCACGTG
Seq C2 exon
GTCCATGGAAAGTGTATATGTAAGCACAACACAGCAGGCACCCACTGCCAACACTGTGCACCTTTATATAACGACCGCCCCTGGGAGGCAGCTGATGGAAAAACAGGGTCTCCAAATGAGTGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003183_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.023
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(70.9=91.0)
A:
PF0005512=Laminin_N=PD(28.2=68.8),PF0005319=Laminin_EGF=PU(38.2=28.0)
C2:
PF0005319=Laminin_EGF=PD(58.8=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGTTCAAGTCTCCCCGG
R:
TTTTTCCATCAGCTGCCTCCC
Band lengths:
295-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development