MmuEX0032522 @ mm9
Exon Skipping
Gene
ENSMUSG00000020019 | Ntn4
Description
netrin 4 [Source:MGI Symbol;Acc:MGI:1888978]
Coordinates
chr10:93107216-93170149:+
Coord C1 exon
chr10:93107216-93107745
Coord A exon
chr10:93145163-93145441
Coord C2 exon
chr10:93170023-93170149
Length
279 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTTCTCTTCTCAGGTT
3' ss Score
12.29
5' ss Seq
GTGGTAGGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
GCTGTGAGAAAGCATGCAACCCTCGCATGGGAAACTTGGCTTTGGGAAGAAAGCTCCGGGCAGACACAATGTGTGGCCAGAACGCCACCGAACTCTTCTGCTTCTACAGTGAGAATGCTGACCTCACTTGCCGGCAGCCCAAGTGTGATAAATGCAACGCTGCCCATTCTCACCTGGCTCACCCACCCTCTGCCATGGCAGACTCATCCTTCAGGTTTCCCCGGACATGGTGGCAGTCTGCAGAGGATGTGCACAGGGAAAAGATTCAGCTAGACCTGGAAGCAGAATTCTACTTCACTCACCTAATTATGGTGTTCAAGTCTCCCAGGCCTGCAGCCATGGTGCTGGACCGGTCCCAGGACTTTGGGAAGACCTGGAAGCCTTACAAGTACTTTGCAACAAACTGCTCGGCTACTTTTGGCCTGGAAGATGATGTTGTCAAGAAGGGAGCTATTTGCACGTCTAGATACTCAAATCCTTTCCCGTGCACCGGAGGAGAG
Seq A exon
GTTATTTTCAGAGCCCTGTCACCACCATACGACATAGAAAACCCTTACAGTGCCAAAGTGCAGGAGCAGCTGAAGATCACCAACCTCCGAGTGCGGCTGCTCAAGCGACAGTCCTGCCCTTGTCAGATAAACGACCTGAACGCAAAACCTCACCATTTTATGCACTACGCAGTCTATGACTTCATCGTCAAGGGCAGCTGCTTCTGCAACGGCCACGCTGACCAGTGCTTACCTGTGGAGGGCTTCAGACCCATCAAGGCCCCGGGAGCGTTCCACGTG
Seq C2 exon
GTCCACGGGAGGTGTATGTGTAAGCACAACACAGCAGGCAGCCACTGCCAGCACTGTGCACCATTGTACAATGACCGGCCCTGGGAGGCAGCGGACGGCAGAACAGGGGCTCCTAACGAATGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020019-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=WD(100=98.6),PF0201215=BNR=WD(100=7.6)
A:
PF0005512=Laminin_N=PD(28.2=68.8),PF0005319=Laminin_EGF=PU(38.2=28.0)
C2:
PF0005319=Laminin_EGF=PD(58.8=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCAGAGGATGTGCACAG
R:
CTGCCTGCTGTGTTGTGCTTA
Band lengths:
306-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: