GgaEX6001622 @ galGal4
Exon Skipping
Gene
ENSGALG00000011406 | NTN4
Description
netrin 4 [Source:HGNC Symbol;Acc:HGNC:13658]
Coordinates
chr1:45481275-45502716:-
Coord C1 exon
chr1:45502187-45502716
Coord A exon
chr1:45490845-45491117
Coord C2 exon
chr1:45481275-45481401
Length
273 bp
Sequences
Splice sites
3' ss Seq
TCTGCCGCATGCCTCTGCAGGTG
3' ss Score
9.97
5' ss Seq
GTGGTACGT
5' ss Score
8.61
Exon sequences
Seq C1 exon
CGTGCGAGAAGGCCTGCAATCCCCGGCTGGGCAACCTGGCACACGGACGGACGCTGAGAACGGAGACGGCCTGCGGGAGCCATGCCGCCGAGCCCTTCTGTGCCTACGCCGAGGACGCCACGCTCCGCTGCAAGCCCCCCACCTGCGGCCACTGCAGTGGGGCCCACGCGGGGCTGGCACACCCCCCCGCTGCCATGGCCGACTCCCCTTTCCGCCTGCCCCGCACCTGGTGGCAGGCGGCCGGGGACGCCCCGCAGGAGACCATCCAGCTGGACCTGGAAGCCACCTTCTACTTCACGCACCTGATCCTGGTCTTCAAGTCACCCCGGCCGGCGGCCATGGTGCTGGAGCGCTCACAGGACTTCGGCAAGACCTGGCAGGCCTACAAGTACTTTGCCACCAACTGCTCGGCGACCTTCGGGCTGGAGGACGACGTGGTGCGGAGGGGAGCCCCATGCACATCCAGATACTCCAGCCCCTTCCCCTGCACCGGAGGAGAG
Seq A exon
GTGATATACCGAGCCCTCTCGCCGCCGCATGCCGCCAAGGACCCATACAGCACAGAGGCCCAGGCACAGCTGAAGGTGACCAACCTCCGTGTGCGGCTGCTGGAGCGGCAGAGCTGCCCCTGCCACCCGCTGGAACCGCCGGCCCTGCCAGCCCCATACTACGCCGTCTACGACTTCATTGTGAAGGGCAGCTGCTTCTGCAATGGCCACGCCGACCACTGTGTCCCCGTCAGAGGGTTCCGGCCTGTCAGGGCAGCCGGTGCTTTCCATGTG
Seq C2 exon
GTCCATGGGAAGTGCATGTGCAAACACAACACTGCAGGACCTCACTGCCAGCACTGTGCCCCGCTCTACAATGACCGCCCTTGGCAGGCTGCTGATGGCAAAACTGGAGCCCCCCGAGAGTGTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011406-'7-6,'7-4,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.090
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(71.6=91.0)
A:
PF0005512=Laminin_N=PD(27.6=68.1),PF0005319=Laminin_EGF=PU(38.2=28.6)
C2:
PF0005319=Laminin_EGF=PD(58.8=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTTCTACTTCACGCACC
R:
CCAAGGGCGGTCATTGTAGAG
Band lengths:
302-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]