RnoEX0061337 @ rn6
Exon Skipping
Gene
ENSRNOG00000005573 | Ntn4
Description
netrin 4 [Source:RGD Symbol;Acc:1565947]
Coordinates
chr7:34536981-34611412:+
Coord C1 exon
chr7:34536981-34537510
Coord A exon
chr7:34580862-34581140
Coord C2 exon
chr7:34611286-34611412
Length
279 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTTCTCTTTACAGGTT
3' ss Score
13.58
5' ss Seq
GTGGTAGGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
GCTGCGAGAAGGCCTGCAACCCTCGAATGGGAAACTTGGCTTTGGGAAGAAAACTCCAGGCGGACACTACCTGCGGGCAGAACGCCACCGAACTGTTCTGCTTCTACAGCGAGAATGCTGATCTCACTTGCCGGCAGCCCAAGTGTGATAAGTGCAACGGGGCCCATTCTCACCTGGCCCACCCACCCTCTGCAATGGCAGACTCGTCCTTCAGGTTTCCCCGGACATGGTGGCAGTCGGCAGAGGATGTGCACAGGGAAAAGATCCAGCTAGACCTGGAAGCAGAATTCTATTTTACTCACCTAATTATGGTGTTCAAGTCCCCCAGGCCTGCAGCCATGGTGCTGGACCGGTCCCAGGACTTTGGGAAGACTTGGAAACCTTACAAGTACTTTGCAACAAACTGTTCTGCTACGTTTGGCCTGGAAGATGATGTTGTCAAGAAGGGAGCTATTTGCACGTCGAGATACTCAAATCCTTTCCCATGTACTGGCGGAGAG
Seq A exon
GTTATTTTCAGAGCCCTGTCACCACCATATGACATAGAAAACCCTTACAGTGCCAAAGTACAGGAGCAGCTGAAGATCACCAACCTCCGCGTGCGGCTGCTCAAGCGACAGTCCTGCCCTTGTCAGAGAAACGACTTGAATGCAAAGCCTCACCATTTCACTCACTACGCCATCTACGACTTCATCGTCAAGGGCAGCTGCTTCTGCAACGGCCACGCTGACCAGTGTTTACCTGTGGAGGGCTTCAGACCCGTCAAGGCCCCAGGAGCGTTCCATGTG
Seq C2 exon
GTCCATGGGAAGTGCATGTGTAAGCACAACACGGCGGGCAGCCACTGCCAGCACTGTGCACCATTATACAACGACCGGCCCTGGGAGGCAGCGGATGGCAGAACAGGGGCTCCTAACGAATGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005573_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(70.9=91.0)
A:
PF0005512=Laminin_N=PD(28.2=68.8),PF0005319=Laminin_EGF=PU(38.2=28.0)
C2:
PF0005319=Laminin_EGF=PD(58.8=93.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTAGACCTGGAAGCAGAA
R:
ATAATGGTGCACAGTGCTGGC
Band lengths:
301-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]