HsaEX6068347 @ hg38
Exon Skipping
Gene
ENSG00000074527 | NTN4
Description
netrin 4 [Source:HGNC Symbol;Acc:HGNC:13658]
Coordinates
chr12:95713212-95787468:-
Coord C1 exon
chr12:95786939-95787468
Coord A exon
chr12:95737866-95738144
Coord C2 exon
chr12:95713212-95713338
Length
279 bp
Sequences
Splice sites
3' ss Seq
TATTTTCTTTCTCCTTACAGGTT
3' ss Score
12.97
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GCTGTGAAAAAGCCTGCAACCCTCGGATGGGAAATTTGGCTTTGGGGCGAAAACTCTGGGCAGACACCACCTGCGGTCAGAATGCTACCGAACTGTACTGCTTCTACAGTGAGAACACGGATCTGACTTGTCGGCAGCCCAAATGTGACAAGTGCAATGCTGCCTATCCTCACCTGGCTCACCTGCCATCTGCCATGGCAGACTCATCCTTCCGGTTTCCTCGCACATGGTGGCAGTCTGCGGAGGATGTGCACAGAGAAAAGATCCAGTTAGACCTGGAAGCTGAATTCTACTTCACTCACCTAATTGTGATGTTCAAGTCCCCCAGGCCGGCTGCCATGGTGCTGGACCGCTCCCAGGACTTTGGGAAAACATGGAAGCCTTATAAGTACTTTGCGACTAACTGCTCCGCTACATTTGGCCTGGAAGATGATGTTGTCAAGAAGGGCGCTATTTGTACTTCTAAATACTCCAGTCCTTTTCCATGCACTGGAGGAGAG
Seq A exon
GTTATTTTCAAAGCTTTGTCACCACCATACGATACAGAGAACCCTTACAGTGCCAAAGTTCAGGAGCAGCTGAAGATCACCAACCTTCGCGTGCAGCTGCTGAAACGACAGTCTTGTCCCTGTCAGAGAAATGACCTGAACGAAGAGCCTCAACATTTTACACACTATGCAATCTATGATTTCATTGTCAAGGGCAGCTGCTTCTGCAATGGCCACGCTGATCAATGCATACCTGTTCATGGCTTCAGACCTGTCAAGGCCCCAGGAACATTCCACATG
Seq C2 exon
GTCCATGGGAAGTGTATGTGTAAGCACAACACAGCAGGCAGCCACTGCCAGCACTGTGCCCCGTTATACAATGACCGGCCATGGGAGGCAGCTGATGGCAAAACGGGGGCTCCCAACGAGTGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074527_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.001 C2=0.023
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(70.9=91.0)
A:
PF0005512=Laminin_N=PD(28.2=68.8),PF0005319=Laminin_EGF=PU(38.2=28.0)
C2:
PF0005319=Laminin_EGF=PD(58.8=93.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGATGTGCACAGAGAAA
R:
CTGCCTGCTGTGTTGTGCTTA
Band lengths:
301-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains