BtaEX0025427 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015291 | ORC4
Description
Bos taurus origin recognition complex, subunit 4 (ORC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001046301]
Coordinates
chr2:48344397-48373941:+
Coord C1 exon
chr2:48344397-48344472
Coord A exon
chr2:48345021-48345106
Coord C2 exon
chr2:48373833-48373941
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTAAATGGGTTTTATTTCAGGAC
3' ss Score
8.25
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
TTAATAAACCATGCTTTGAAAGAACTAATGGAAATAGAAGGAGTGAGTGAAAACATATTACAAGTTCACTTAAATG
Seq A exon
GACTGCTGCAGATCAATGATAAAATTGCCCTAAAGGAAATCACAAGACAGTTAAATCTGGAAAATGTAGTTGGAGATAAAGTTTTT
Seq C2 exon
ATGCTTGCTTTAAATCGTGTAACACCGTCACACCCATTTATAACTGCAGCAGATCTAATGGAGGCAAACCAGCTGTGTAGCATGGACTCAAAAGGAAATATTGTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015291_MULTIEX1-7/14=6-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(16.1=100)
A:
PF131911=AAA_16=FE(18.1=100)
C2:
PF146291=ORC4_C=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCATGCTTTGAAAGAACTAATGGA
R:
TTCCTTTTGAGTCCATGCTACACA
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development