DreEX0052679 @ danRer10
Exon Skipping
Gene
ENSDARG00000101161 | orc4
Description
origin recognition complex, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2224]
Coordinates
chr6:902004-904062:-
Coord C1 exon
chr6:903987-904062
Coord A exon
chr6:902415-902500
Coord C2 exon
chr6:902004-902052
Length
86 bp
Sequences
Splice sites
3' ss Seq
ATCTGGCTTTCTGAATGCAGGTC
3' ss Score
7.04
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
TTGTTGGGTTGTGTTCTCCGAGAGCTCATGAGTCTGAAGGAGGTGCAGAAGAATGTTCTGCTGGTGGAGCTGAACG
Seq A exon
GTCTTCTGCAGACGGATGATAAAATTGCTCTGAAAGAAATCACGCGGCAGCTGCATCTGGAGAACGTCGTAGGAGACAAAGTGTTT
Seq C2 exon
GGCAGTTTTGCGGAAAATCTGGCTTTTCTTTTGGAGGCTCTCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101161_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(21.0=100),PF137641=E3_UbLigase_R4=PU(25.0=69.2)
A:
PF131911=AAA_16=FE(23.5=100),PF137641=E3_UbLigase_R4=FE(38.9=100)
C2:
PF131911=AAA_16=FE(13.4=100),PF137641=E3_UbLigase_R4=FE(22.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTGGGTTGTGTTCTCCGA
R:
TGAGAGCCTCCAAAAGAAAAGCC
Band lengths:
119-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]