MmuEX6101121 @ mm10
Exon Skipping
Gene
ENSMUSG00000026761 | Orc4
Description
origin recognition complex, subunit 4 [Source:MGI Symbol;Acc:MGI:1347043]
Coordinates
chr2:48929681-48933622:-
Coord C1 exon
chr2:48933550-48933622
Coord A exon
chr2:48933080-48933165
Coord C2 exon
chr2:48929681-48929729
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTAATTGTACTCTGTTTCAGGAC
3' ss Score
11.17
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
TTATTAAATCATGCTTTGAAAGAACTCATGGAAATAGAAGTGAGTGAAAATGTGATACAAGTTCACTTAAATG
Seq A exon
GACTCCTGCAGACAAATGAAAAAATTGCTCTGAAAGAGATCACAAGACAATTAAATCTAGACAATGTAGTTGAAGATAAAGTTTTT
Seq C2 exon
GGAAGCTTTGCTGAAAACCTTTCATTTCTTCTGGAAGCTTTGCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026761-'16-18,'16-15,18-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(15.6=100)
A:
PF131911=AAA_16=FE(18.2=100)
C2:
PF131911=AAA_16=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCTTTGAAAGAACTCATGGA
R:
CTTTTTGCAAAGCTTCCAGAAGA
Band lengths:
114-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types