GgaEX1041348 @ galGal4
Exon Skipping
Gene
ENSGALG00000012448 | ORC4
Description
origin recognition complex, subunit 4 [Source:HGNC Symbol;Acc:HGNC:8490]
Coordinates
chr7:34066454-34068750:-
Coord C1 exon
chr7:34068675-34068750
Coord A exon
chr7:34068183-34068268
Coord C2 exon
chr7:34066454-34066502
Length
86 bp
Sequences
Splice sites
3' ss Seq
AAGTAGTCATTTTCTTTCAGGGC
3' ss Score
5.03
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
TTATTAAATCGTGTCTTAAAAGACCTCAGAGAAATGAAACAAGTTAAAGAGAACCTCTTGGAAGTTCATCTGAATG
Seq A exon
GGCTTTTGCAGACAAACGATAAAGTGGCCTTGAAGGAGATCACCAGGCAGTTGCACCTGGAAAATGTCGTTGGGGATAAAGTTTTT
Seq C2 exon
GGCAGTTTTGCAGAAAATCTTGCGTTCCTTCTTGAAGCTTTAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012448_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(16.1=100)
A:
PF131911=AAA_16=FE(18.1=100)
C2:
PF131911=AAA_16=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGACCTCAGAGAAATGAAACAAGT
R:
CCTTAAAGCTTCAAGAAGGAACGC
Band lengths:
103-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]